Journal article

Maps of variability in cell lineage trees

Damien Hicks, Terence Speed, Mohammed Yassin, Sarah Russell

PLoS Computational Biology | Public Library of Science (PLoS) | Published : 2019

Open access

Abstract

New approaches to lineage tracking allow the study of cell differentiation over many generations of cells during development in multicellular organisms. Understanding the variability observed in these lineage trees requires new statistical methods. Whereas invariant cell lineages, such as that for the nematode Caenorhabditis elegans , can be described using a lineage map, defined as the fixed pattern of phenotypes overlaid onto the binary tree structure, the variability of cell lineages from higher organisms makes it impossible to draw a single lineage map. Here, we introduce lineage variability maps which describe the pattern of second-order variation throughout the lineage tree. These maps..

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University of Melbourne Researchers

Grants

Awarded by National Health and Medical Research Council


Funding Acknowledgements

This work was supported in part by Australian Research Council (ARC) grant FT140101104 to DGH, the National Health and Medical Research Council of Australia (NHMRC) Program Grant 1054618 to TPS, and NHMRC grants 620500 and APP1099140 and ARC grant FT0990405 to SMR. The sponsors or funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. ARC - https://www.arc.gov.au/ NHMRC - https://www.nhmrc.gov.au/